Detailed information of SNP:
|
SNP ID:
sf0114797735(Gbrowse)
Chromosome: chr01 Position: 14797735 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 98.68% | 1.32% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 440 | 95.91% | 4.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 94.44% | 5.56% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 44 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114797735 | C->A | INTERGENIC | None |