Detailed information of SNP:
|
SNP ID:
sf0114829936(Gbrowse)
Chromosome: chr01 Position: 14829936 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 60.04% | 39.96% |
| All Indica | 783 | 43.30% | 56.70% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 368 | 51.36% | 48.64% |
| Indica II | 207 | 46.86% | 53.14% |
| Indica Intermediate | 208 | 25.48% | 74.52% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114829936 | T->C | INTERGENIC | None |