Detailed information of SNP:
|
SNP ID:
sf0114838880(Gbrowse)
Chromosome: chr01 Position: 14838880 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1272 | 82.23% | 17.77% |
| All Indica | 660 | 68.64% | 31.36% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 290 | 60.69% | 39.31% |
| Indica II | 181 | 67.40% | 32.60% |
| Indica Intermediate | 189 | 82.01% | 17.99% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114838880 | A->G | INTERGENIC | None |