Detailed information of SNP:
|
SNP ID:
sf0114876578(Gbrowse)
Chromosome: chr01 Position: 14876578 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 78.04% | 21.96% |
| All Indica | 787 | 61.88% | 38.12% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 51.08% | 48.92% |
| Indica II | 211 | 64.93% | 35.07% |
| Indica Intermediate | 206 | 78.16% | 21.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114876578 | G->A | LOC_Os01g26240(LOC_Os01g26240.1) | Synonymous |