Detailed information of SNP:
|
SNP ID:
sf0114880461(Gbrowse)
Chromosome: chr01 Position: 14880461 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 60.25% | 39.75% |
| All Indica | 794 | 89.80% | 10.20% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114880461 | T->C | INTERGENIC | None |