Detailed information of SNP:
|
SNP ID:
sf0114888967(Gbrowse)
Chromosome: chr01 Position: 14888967 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 50.43% | 49.57% |
| All Indica | 785 | 79.75% | 20.25% |
| All Japonica | 476 | 1.89% | 98.11% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 368 | 75.00% | 25.00% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 326 | 1.53% | 98.47% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 57 | 3.51% | 96.49% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114888967 | C->G | INTERGENIC | None |