Detailed information of SNP:
|
SNP ID:
sf0114889496(Gbrowse)
Chromosome: chr01 Position: 14889496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 51.01% | 48.99% |
| All Indica | 788 | 80.20% | 19.80% |
| All Japonica | 477 | 2.31% | 97.69% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 369 | 75.61% | 24.39% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 206 | 75.24% | 24.76% |
| Temperate Japonica | 326 | 1.53% | 98.47% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 58 | 6.90% | 93.10% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114889496 | G->A | INTERGENIC | None |