Detailed information of SNP:
|
SNP ID:
sf0115016236(Gbrowse)
Chromosome: chr01 Position: 15016236 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 94.98% | 5.02% |
| All Indica | 796 | 93.72% | 6.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115016236 | G->A | INTERGENIC | None |