Detailed information of SNP:
|
SNP ID:
sf0115020992(Gbrowse)
Chromosome: chr01 Position: 15020992 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.09% | 32.91% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115020992 | A->G | LOC_Os01g26970(LOC_Os01g26970.4) | INTRON |
| sf0115020992 | A->G | LOC_Os01g26970(LOC_Os01g26970.1) | INTRON |
| sf0115020992 | A->G | LOC_Os01g26970(LOC_Os01g26970.3) | INTRON |
| sf0115020992 | A->G | LOC_Os01g26970(LOC_Os01g26970.5) | INTRON |
| sf0115020992 | A->G | LOC_Os01g26970(LOC_Os01g26970.2) | INTRON |