Detailed information of SNP:
|
SNP ID:
sf0115146385(Gbrowse)
Chromosome: chr01 Position: 15146385 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.56% | 25.44% |
| All Indica | 799 | 66.83% | 33.17% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 58.40% | 41.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115146385 | G->T | LOC_Os01g27160(LOC_Os01g27160.1) | INTRON |