Detailed information of SNP:
|
SNP ID:
sf0115223362(Gbrowse)
Chromosome: chr01 Position: 15223362 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 67.68% | 32.32% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 497 | 17.30% | 82.70% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115223362 | C->G | LOC_Os01g27280(LOC_Os01g27280.1) | INTRON |