Detailed information of SNP:
|
SNP ID:
sf0115226553(Gbrowse)
Chromosome: chr01 Position: 15226553 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 55.34% | 44.66% |
| All Indica | 787 | 28.21% | 71.79% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 371 | 23.72% | 76.28% |
| Indica II | 209 | 29.67% | 70.33% |
| Indica Intermediate | 207 | 34.78% | 65.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115226553 | C->A | LOC_Os01g27280(LOC_Os01g27280.1) | Non-Synonymous SNP |