Detailed information of SNP:
|
SNP ID:
sf0115234345(Gbrowse)
Chromosome: chr01 Position: 15234345 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 94.29% | 5.71% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115234345 | T->C | INTERGENIC | None |