Detailed information of SNP:
|
SNP ID:
sf0115240202(Gbrowse)
Chromosome: chr01 Position: 15240202 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 86.97% | 13.03% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 406 | 65.27% | 34.73% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 270 | 74.07% | 25.93% |
| Tropical Japonica | 75 | 21.33% | 78.67% |
| Japonica Intermediate | 61 | 80.33% | 19.67% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115240202 | A->G | INTERGENIC | None |