Detailed information of SNP:
|
SNP ID:
sf0115283367(Gbrowse)
Chromosome: chr01 Position: 15283367 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.07% | 20.93% |
| All Indica | 799 | 66.83% | 33.17% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115283367 | G->A | LOC_Os01g27370(LOC_Os01g27370.1) | Synonymous |