Detailed information of SNP:
|
SNP ID:
sf0115319528(Gbrowse)
Chromosome: chr01 Position: 15319528 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 94.85% | 5.15% |
| All Indica | 781 | 93.34% | 6.66% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 363 | 90.91% | 9.09% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115319528 | T->C | LOC_Os01g27440(LOC_Os01g27440.1) | Non-Synonymous SNP |