Detailed information of SNP:
|
SNP ID:
sf0115328740(Gbrowse)
Chromosome: chr01 Position: 15328740 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 87.35% | 12.65% |
| All Indica | 795 | 82.39% | 17.61% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 211 | 63.51% | 36.49% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115328740 | G->A | LOC_Os01g27449(LOC_Os01g27449.1) | INTRON |