Detailed information of SNP:
|
SNP ID:
sf0115331926(Gbrowse)
Chromosome: chr01 Position: 15331926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 95.72% | 4.28% |
| All Indica | 738 | 92.55% | 7.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 346 | 93.35% | 6.65% |
| Indica II | 196 | 90.82% | 9.18% |
| Indica Intermediate | 196 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115331926 | C->T | INTERGENIC | None |