Detailed information of SNP:
|
SNP ID:
sf0115332851(Gbrowse)
Chromosome: chr01 Position: 15332851 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 80.62% | 19.38% |
| All Indica | 794 | 70.15% | 29.85% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 62.20% | 37.80% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 58.37% | 41.63% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115332851 | T->G | INTERGENIC | None |