Detailed information of SNP:
|
SNP ID:
sf0115341721(Gbrowse)
Chromosome: chr01 Position: 15341721 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.10% | 43.90% |
| All Indica | 799 | 83.73% | 16.27% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115341721 | T->C | INTERGENIC | None |