Detailed information of SNP:
|
SNP ID:
sf0115385373(Gbrowse)
Chromosome: chr01 Position: 15385373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.38% | 20.62% |
| All Indica | 796 | 66.58% | 33.42% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 52.88% | 47.12% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115385373 | G->A | INTERGENIC | None |