Detailed information of SNP:
|
SNP ID:
sf0115494318(Gbrowse)
Chromosome: chr01 Position: 15494318 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 78.47% | 21.53% |
| All Indica | 787 | 68.23% | 31.77% |
| All Japonica | 494 | 93.72% | 6.28% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 370 | 59.73% | 40.27% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 206 | 55.83% | 44.17% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115494318 | G->A | LOC_Os01g27760(LOC_Os01g27760.1) | INTRON |