Detailed information of SNP:
|
SNP ID:
sf0115498519(Gbrowse)
Chromosome: chr01 Position: 15498519 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.27% | 26.73% |
| All Indica | 799 | 56.70% | 43.30% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115498519 | C->T | INTERGENIC | None |