Detailed information of SNP:
|
SNP ID:
sf0115587495(Gbrowse)
Chromosome: chr01 Position: 15587495 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 89.39% | 10.61% |
| All Indica | 704 | 80.68% | 19.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 320 | 87.50% | 12.50% |
| Indica II | 194 | 75.77% | 24.23% |
| Indica Intermediate | 190 | 74.21% | 25.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115587495 | G->A | INTERGENIC | None |