Detailed information of SNP:
|
SNP ID:
sf0115587544(Gbrowse)
Chromosome: chr01 Position: 15587544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1337 | 90.88% | 9.12% |
| All Indica | 723 | 83.68% | 16.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 337 | 89.32% | 10.68% |
| Indica II | 198 | 78.79% | 21.21% |
| Indica Intermediate | 188 | 78.72% | 21.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115587544 | T->C | INTERGENIC | None |