Detailed information of SNP:
|
SNP ID:
sf0115642551(Gbrowse)
Chromosome: chr01 Position: 15642551 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115642551 | T->G | INTERGENIC | None |