Detailed information of SNP:
|
SNP ID:
sf0115668394(Gbrowse)
Chromosome: chr01 Position: 15668394 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.92% | 40.08% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115668394 | T->C | INTERGENIC | None |