Detailed information of SNP:
|
SNP ID:
sf0115836806(Gbrowse)
Chromosome: chr01 Position: 15836806 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 95.60% | 4.40% |
| All Indica | 771 | 92.61% | 7.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 360 | 92.50% | 7.50% |
| Indica II | 203 | 91.13% | 8.87% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115836806 | T->C | LOC_Os01g28270(LOC_Os01g28270.1) | Non-Synonymous SNP |