Detailed information of SNP:
|
SNP ID:
sf0115897981(Gbrowse)
Chromosome: chr01 Position: 15897981 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 94.63% | 5.37% |
| All Indica | 760 | 91.05% | 8.95% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 359 | 89.42% | 10.58% |
| Indica II | 206 | 98.54% | 1.46% |
| Indica Intermediate | 195 | 86.15% | 13.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115897981 | C->G | LOC_Os01g28370(LOC_Os01g28370.1) | INTRON |