Detailed information of SNP:
|
SNP ID:
sf0115926632(Gbrowse)
Chromosome: chr01 Position: 15926632 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 96.57% | 3.43% |
| All Indica | 753 | 94.29% | 5.71% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 356 | 94.94% | 5.06% |
| Indica II | 201 | 93.53% | 6.47% |
| Indica Intermediate | 196 | 93.88% | 6.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115926632 | A->C | INTERGENIC | None |