Detailed information of SNP:
|
SNP ID:
sf0115946477(Gbrowse)
Chromosome: chr01 Position: 15946477 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 52.09% | 47.91% |
| All Indica | 794 | 24.18% | 75.82% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 370 | 30.00% | 70.00% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 211 | 13.27% | 86.73% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115946477 | T->G | INTERGENIC | None |