Detailed information of SNP:
|
SNP ID:
sf0115947296(Gbrowse)
Chromosome: chr01 Position: 15947296 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.38% | 45.62% |
| All Indica | 796 | 27.51% | 72.49% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 372 | 28.49% | 71.51% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 14.22% | 85.78% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115947296 | C->T | INTERGENIC | None |