Detailed information of SNP:
|
SNP ID:
sf0115988141(Gbrowse)
Chromosome: chr01 Position: 15988141 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115988141 | C->T | INTERGENIC | None |