Detailed information of SNP:
|
SNP ID:
sf0115993807(Gbrowse)
Chromosome: chr01 Position: 15993807 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 56.01% | 43.99% |
| All Indica | 769 | 27.31% | 72.69% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 360 | 23.61% | 76.39% |
| Indica II | 205 | 30.73% | 69.27% |
| Indica Intermediate | 204 | 30.39% | 69.61% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0115993807 | G->A | LOC_Os01g28580(LOC_Os01g28580.1) | INTRON |