Detailed information of SNP:
|
SNP ID:
sf0116026160(Gbrowse)
Chromosome: chr01 Position: 16026160 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 91.60% | 8.40% |
| All Indica | 748 | 87.57% | 12.43% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 59 | 72.88% | 27.12% |
| Indica I | 357 | 93.84% | 6.16% |
| Indica II | 194 | 71.13% | 28.87% |
| Indica Intermediate | 197 | 92.39% | 7.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116026160 | G->A | INTERGENIC | None |