Detailed information of SNP:
|
SNP ID:
sf0116084099(Gbrowse)
Chromosome: chr01 Position: 16084099 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1172 | 81.23% | 18.77% |
| All Indica | 787 | 95.43% | 4.57% |
| All Japonica | 271 | 49.08% | 50.92% |
| Aus | 63 | 63.49% | 36.51% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 205 | 87.32% | 12.68% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 174 | 65.52% | 34.48% |
| Tropical Japonica | 62 | 12.90% | 87.10% |
| Japonica Intermediate | 35 | 31.43% | 68.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116084099 | T->A | INTERGENIC | None |