Detailed information of SNP:
|
SNP ID:
sf0116187949(Gbrowse)
Chromosome: chr01 Position: 16187949 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 53.73% | 46.27% |
| All Indica | 794 | 85.89% | 14.11% |
| All Japonica | 494 | 2.83% | 97.17% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116187949 | A->G | LOC_Os01g28882(LOC_Os01g28882.1) | INTRON |