Detailed information of SNP:
|
SNP ID:
sf0116260899(Gbrowse)
Chromosome: chr01 Position: 16260899 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 91.83% | 8.17% |
| All Indica | 779 | 85.88% | 14.12% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 363 | 78.51% | 21.49% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116260899 | C->T | LOC_Os01g29050(LOC_Os01g29050.1) | INTRON |