Detailed information of SNP:
|
SNP ID:
sf0116412291(Gbrowse)
Chromosome: chr01 Position: 16412291 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.47% | 41.53% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116412291 | A->G | LOC_Os01g29270(LOC_Os01g29270.1) | Non-Synonymous SNP |