Detailed information of SNP:
|
SNP ID:
sf0116422593(Gbrowse)
Chromosome: chr01 Position: 16422593 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.84% | 4.16% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116422593 | T->C | INTERGENIC | None |