Detailed information of SNP:
|
SNP ID:
sf0116559205(Gbrowse)
Chromosome: chr01 Position: 16559205 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.04% | 36.96% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 495 | 5.25% | 94.75% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116559205 | A->C | LOC_Os01g29540(LOC_Os01g29540.1) | Non-Synonymous SNP |