Detailed information of SNP:
|
SNP ID:
sf0116642014(Gbrowse)
Chromosome: chr01 Position: 16642014 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 62.23% | 37.77% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 493 | 3.25% | 96.75% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116642014 | C->A | INTERGENIC | None |