Detailed information of SNP:
|
SNP ID:
sf0116740571(Gbrowse)
Chromosome: chr01 Position: 16740571 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 54.62% | 45.38% |
| All Indica | 789 | 87.33% | 12.67% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 368 | 86.14% | 13.86% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116740571 | A->G | INTERGENIC | None |