Detailed information of SNP:



SNP ID: sf0116759959(Gbrowse)

Chromosome: chr01

Position: 16759959
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 98.87% 1.13%
All Indica796 97.99% 2.01%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 98.40% 1.60%
Indica II212 97.64% 2.36%
Indica Intermediate210 97.62% 2.38%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0116759959 C->T INTERGENIC None