Detailed information of SNP:
|
SNP ID:
sf0116836901(Gbrowse)
Chromosome: chr01 Position: 16836901 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 90.83% | 9.17% |
| All Indica | 749 | 84.65% | 15.35% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 351 | 84.62% | 15.38% |
| Indica II | 192 | 87.50% | 12.50% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116836901 | C->A | LOC_Os01g29910(LOC_Os01g29910.1) | INTRON |