Detailed information of SNP:
|
SNP ID:
sf0116843281(Gbrowse)
Chromosome: chr01 Position: 16843281 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 51.51% | 48.49% |
| All Indica | 771 | 20.23% | 79.77% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 360 | 20.00% | 80.00% |
| Indica II | 209 | 23.44% | 76.56% |
| Indica Intermediate | 202 | 17.33% | 82.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116843281 | G->A | LOC_Os01g29920(LOC_Os01g29920.1) | Non-Synonymous SNP |