Detailed information of SNP:
|
SNP ID:
sf0116881106(Gbrowse)
Chromosome: chr01 Position: 16881106 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1303 | 62.70% | 37.30% |
| All Indica | 700 | 32.86% | 67.14% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 57 | 82.46% | 17.54% |
| Indica I | 345 | 17.10% | 82.90% |
| Indica II | 174 | 56.32% | 43.68% |
| Indica Intermediate | 181 | 40.33% | 59.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116881106 | T->C | INTERGENIC | None |