Detailed information of SNP:
|
SNP ID:
sf0116931516(Gbrowse)
Chromosome: chr01 Position: 16931516 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 92.87% | 7.13% |
| All Indica | 742 | 87.33% | 12.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 362 | 84.53% | 15.47% |
| Indica II | 191 | 90.05% | 9.95% |
| Indica Intermediate | 189 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116931516 | G->T | LOC_Os01g30980(LOC_Os01g30980.1) | INTRON |