Detailed information of SNP:
|
SNP ID:
sf0116960556(Gbrowse)
Chromosome: chr01 Position: 16960556 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 97.56% | 2.44% |
| All Indica | 737 | 95.66% | 4.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 94.05% | 5.95% |
| Indica II | 192 | 97.40% | 2.60% |
| Indica Intermediate | 192 | 96.88% | 3.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116960556 | A->G | LOC_Os01g31020(LOC_Os01g31020.1) | Non-Synonymous SNP |