Detailed information of SNP:
|
SNP ID:
sf0116964586(Gbrowse)
Chromosome: chr01 Position: 16964586 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 94.37% | 5.63% |
| All Indica | 785 | 91.59% | 8.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 365 | 90.41% | 9.59% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116964586 | C->T | LOC_Os01g31020(LOC_Os01g31020.1) | INTRON |